rs51321116 SNP Detail

Summary

• ID
  rs51321116
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTTTGTT TATCAAATAC CATTCCTGAT AAAATTCCCT
  GGAAAAATAT TTTCTATCAA TATTTTGGGG GTCTTAGGTT ATTTTTAAAA CTCTATGGAA
  A
  TTTTAATTCC ACATACAGCC CTTTTCACTA CATCCTGAGC TATAGCGTCC ATATAATAAA
  TAACCAAATT CCATAGTATG TAAAGACGCA AAAAGCATT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809948	ENSMUSSNP2519198	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320711440	CHEV_3_37538054	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51321116					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	549 bp proximal
Gm42922	predicted gene 42922	973 bp downstream
Rr575523	regulatory region 575523	325 bp proximal
Rr575524	regulatory region 575524	959 bp proximal
Rr575525	regulatory region 575525	1644 bp proximal
Rr575526	regulatory region 575526	1752 bp proximal
Spry1	sprouty RTK signaling antagonist 1	815 bp upstream
Tssr28908	transcription start site region 28908	532 bp upstream
Tssr28909	transcription start site region 28909	773 bp upstream
Tssr28910	transcription start site region 28910	796 bp upstream
Tssr28911	transcription start site region 28911	813 bp upstream
Tssr28912	transcription start site region 28912	853 bp upstream