rs51321945 SNP Detail

Summary

• ID
  rs51321945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28946153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCACAT TAAAAAAAAA
  AAGAGCCCAA AGTAGATCTA TTCTTATAAT CTCAGAGCTA GGAATGTGGG GCTCATTGGT
  ACCAGCCTAG CCTACTTGGT AAAGGGTCCT CTAACTCCCA CAAATATAGG TACACACACA
  CACACACACC CCCAAAGAAA CATCGGGAAC AGTGAGGTGG CTAAGCAGGT GAAGGGCGCT
  Y
  GCTACCAAGC TCCTGCAGGC TGCGCTGACG TGCATACCAG GGCTCAAGTA GATCCATCAC
  CAGGAACTCG AGGCCACCTT GGTCTACATG TCAAGATCCT GCCTCCCAGA GAGAAAGAGC
  GCGGGAGGGG GAGAAGGAGG GGGAGGAAGG CATCTGAGCC AAACCAAAAA GGAAATAGCT
  CTTCTAGTTT GTCTTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60986968	NES16139378	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51321945					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986968	NES16139378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28946153 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	793 bp downstream
Cpgi18753	CpG island 18753	507 bp proximal
Gm73451	predicted gene, 73451	887 bp upstream
Rr644522	regulatory region 644522	1412 bp distal
Rr644523	regulatory region 644523	397 bp proximal
Rr644524	regulatory region 644524	816 bp proximal
Rr644525	regulatory region 644525	1728 bp proximal
Tssr65617	transcription start site region 65617	978 bp downstream
Tssr65618	transcription start site region 65618	907 bp upstream
Tssr71635	transcription start site region 71635	394 bp downstream
Tssr71636	transcription start site region 71636	998 bp downstream
Tssr71637	transcription start site region 71637	1198 bp downstream
Tssr71638	transcription start site region 71638	1216 bp downstream
Tssr71639	transcription start site region 71639	1647 bp downstream
Tssr71640	transcription start site region 71640	1729 bp downstream
Tssr71641	transcription start site region 71641	1783 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates