rs51323090 SNP Detail

Summary

• ID
  rs51323090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126396309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACGATGG AAGCTGAGGT
  CAAACCTCCT GAGGCTTCAA GAAGCCACAA GTCCGGTGAG GGCAGGATGG CCTACTAGTG
  GTCATTGTGT GAGAGGACAA AGAGAGGAAG GAGCCGGTGA CAGAAGCTAC AGCCTCTGAC
  AGATGCACAG CAACCACAAA AAAGGTTGAC TTGAGCAGTG GTCAGCAGGC TCTGAGGCCT
  R
  AATGGGCAGG GCGGCCCATT TACTTCCGGT ACGTGATCCC TAAAGACGTA GGACCTGCGG
  TGATGAAATA TAAAATAGAA ATTATATTCA TTTATATAAA ATTTAGAGAG AGTGCTGCTT
  GAGCGCGTCT ACTCCCTCAG CATCACGCAG CTGCTCCGAC AAAACCCCAT AGGCAAAAGA
  ACTCCCAAGA GCACTCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145888359	ENSMUSSNP187460	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51323090					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126396309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	within coordinates
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	248 bp upstream
Rr175263	regulatory region 175263	109 bp distal
Rr186277	regulatory region 186277	within coordinates
Rr188607	regulatory region 188607	1884 bp distal
Rr401217	regulatory region 401217	1944 bp upstream
Tssr80077	transcription start site region 80077	258 bp upstream
Tssr83475	transcription start site region 83475	167 bp downstream