rs51323368 SNP Detail

Summary

• ID
  rs51323368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72889197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTGGGT GGGTGATACC
  TCAGCTCCGT GAGGCTTCCC TCCTTGGCCT CAGGCGGGGC AGGTCTAACG CCACTCTCAG
  CTGGCTTCTT CTCTCTGTGC TCAGTGTCTG TCAGGAAAGT GCCCTGGAGA ACTGAGAAGT
  AGGGTTAAGC CCTTGCAGCT CAGCTCTTCC AGAGGTTTGG ATGTAGCTAC AGTAGAAGTA
  R
  GTTTCAACCT AAACCAGTAT ACCTGAGAGT AGCGCTCTAG GCCCTCCTCG GGAGGATGTC
  ACGTGATAGG TTTGGGTGAA TCTGCAGTTT GCATTTCTCC CTTCCCCTTC TTCCCCTTCC
  CTTTCCCTTT CCTTCCTTTT CCCTTCCCCT CCCCTTTCCT TTCTTTTCCC TTTCTACCTT
  GCTCCTCCCT CTTCCCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750561	NES16381650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51323368					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750561	NES16381650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72889197 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	952 bp downstream
Tssr7322	transcription start site region 7322	894 bp downstream
Tssr7323	transcription start site region 7323	855 bp downstream
Tssr7324	transcription start site region 7324	824 bp downstream
Tssr7325	transcription start site region 7325	804 bp downstream
Tssr7326	transcription start site region 7326	769 bp downstream
Tssr7327	transcription start site region 7327	748 bp downstream
Tssr7328	transcription start site region 7328	429 bp downstream
Tssr7329	transcription start site region 7329	417 bp downstream
Tssr7330	transcription start site region 7330	384 bp downstream
Tssr7331	transcription start site region 7331	1957 bp upstream
Tssr7332	transcription start site region 7332	1986 bp upstream
Tssr12178	transcription start site region 12178	914 bp upstream
Tssr12179	transcription start site region 12179	865 bp upstream
Tssr12180	transcription start site region 12180	802 bp upstream
Tssr12181	transcription start site region 12181	772 bp upstream
Tssr12182	transcription start site region 12182	739 bp upstream
Tssr12183	transcription start site region 12183	727 bp upstream