rs51324895 SNP Detail

Summary

• ID
  rs51324895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CACCCTACCT CCATGAGGGG
  Y
  GTCAGCTCAG CTCTGCAAGT GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007361	PARCsnp_1.17759	PARC_SEQ	INBRED	f	SNP		C	T
ss120010261	PARCsnp_1.07398	PARC_SEQ	INBRED	f	SNP		C	T
ss146183856	ENSMUSSNP1619531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123207	CHEV_1_174137688	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51324895					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	604 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	826 bp upstream
Rr396578	regulatory region 396578	17 bp downstream
Rr423485	regulatory region 423485	764 bp distal
Rr423486	regulatory region 423486	263 bp distal
Tssr294	transcription start site region 294	924 bp upstream
Tssr295	transcription start site region 295	874 bp upstream
Tssr296	transcription start site region 296	798 bp upstream
Tssr297	transcription start site region 297	764 bp upstream
Tssr15164	transcription start site region 15164	892 bp upstream
Tssr15165	transcription start site region 15165	802 bp upstream
Tssr15166	transcription start site region 15166	771 bp upstream
Tssr15167	transcription start site region 15167	144 bp downstream