rs51326249 SNP Detail

Summary

• ID
  rs51326249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127204577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAATCA ATCAAATCTC
  CCTTTGTCTG CTTTTCACCA CTATTCCATT GTTCCTCTCT TTAGCCAAAA TACTGGGATG
  GGTGGCCAAG CCTCACCTGT CGTGGTTGCT GGAGGCCAGG AAAAACCCTA GCAGAGAAAA
  TTATCCTCTT TATTTTAACT TCCTATGCAT TCGGGTCCCT AAAGCAGTTC AGGCATATAT
  R
  TGGAAACAGT GAAAAAGCAT TTGAACACCA TGCACCATGG TATCATTTCT AGTGACTTAA
  ACCCCATGCC CTCAGAGACA CTACACAGTT TTTGATGCTT TGTGCATAAC ATCAAAGAAA
  TGGAGCCAGC CTAGATGTTC ATCAGAGACG AGTAGATAAT GGAAATGTCT AAAGTATACG
  CACAATGAAA TGTTACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135862719	ENSMUSSNP6827463	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320953881	CHEV_3_127113846	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51326249					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127204577 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1972 bp distal
Rr584774	regulatory region 584774	1379 bp distal
Tssr35572	transcription start site region 35572	1947 bp upstream
Tssr35573	transcription start site region 35573	1920 bp upstream
Tssr35574	transcription start site region 35574	1885 bp upstream
Tssr35575	transcription start site region 35575	1864 bp upstream