rs51326673 SNP Detail

Summary

• ID
  rs51326673
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:92896715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTTCGAC CAATGTCTCA
  AAGAAGGTAG ACAGAATTCC CAAGAGTGGT ACCCAAATAG TCCAATGGCC TGCAAAAACA
  CATTGTATCT GCACATGCAT GAGTGCACAC ACACTATGTA CATGCAAAAA AAAATGATCA
  TTTAAAAGTC CCCTCACCCA CAGCTACAGG AGTTAGAGAG TCAGGGTGTT TCTTCCAAGT
  M
  GCATGTGAGT TGTAAGTAAA AAGTCCAAGA ACTCCACAAT ACTATTCATC CTGCACACCA
  CGACACTTTG CAGAGTGACA GCGAGAGGGG ACTTTTAATG ATTCCTATGG GGCAAACAGC
  ATAAAGAGGA ATGTCCTGGG CCAGCCAGGA AGCAGAATCC CCTTTAGTAA CCAGATACAT
  GGTCCGTTCG TTATCAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61303555	NES16913797	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51326673					SNP	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61303555	NES16913797	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:92896715 () rs orientation: forward

Symbol	Name	Function Class
Cfap54	cilia and flagella associated protein 54	within coordinates
Rr217502	regulatory region 217502	286 bp proximal
Rr223960	regulatory region 223960	247 bp distal