rs51328102 SNP Detail

Summary

• ID
  rs51328102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59789921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCCCTGAT ATTTTTCCCT CTTGAAGGAA GAAAATATTT
  TAGGGGATCC CACAGATAAG AGACTTTTAA TTGTAAAAAG ACTTTGGATT TTAAAAGATA
  Y
  TGGATATTTT AAAAGGATTG AACTTTGAAT ATGTAAAGAT TGTGGGACTT TTAAAGTTGT
  TTAGACCTTC TCTGCTGCAT CCAGCCACAA TCAATTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149079795	ENSMUSSNP256513	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324357488	CHEV_13_59743468	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51328102					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59789921 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Rr481237	regulatory region 481237	440 bp proximal
Tssr4093	transcription start site region 4093	1870 bp upstream
Tssr122874	transcription start site region 122874	1935 bp upstream
Tssr122875	transcription start site region 122875	1918 bp upstream