rs51328254 SNP Detail

Summary

• ID
  rs51328254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69488568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGAGAAG AGAGAGAGAG AGAGAGAGAT GCCTGTCATC
  CCAGTGACTG GGAGACTGAT GCAGGAAGAT GGTAGCAAGT TGGAGACTGG CCTAGGCTAC
  Y
  TTCATCCTTG CTTCAAAAAG GAGGCAGGAG GCTTTTAATT TTTTTTTAGA CAGGGTCTGC
  AGCTCAAGCT GGGGTCAAAT TCCCATTGAA GATGATGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132359108	ENSMUSSNP5159751	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323730620	CHEV_11_69411244	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51328254					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69488568 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	1994 bp downstream
Gm72066	predicted gene, 72066	1987 bp upstream
Rr386229	regulatory region 386229	1665 bp upstream
Rr450033	regulatory region 450033	1806 bp proximal
Rr450034	regulatory region 450034	1847 bp proximal