rs51328913 SNP Detail

Summary

• ID
  rs51328913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5083936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGATCC GAGTGCTGTT
  TGTGTCTTGG ATTGCTCCGT GTTCCTGTCA GGATGCATGC AATGCTTGTA TTTTCTGGGT
  TTCTGTGTCT TCATTTCCCC AGACTGGTCT CCCTCTTGGT GCATTATTTC TCTCCGGGTC
  ATTGCTGTCG TCCCCAGGCC CAAAATTCCT TTCTAGGAAC CCACTGCTTT TGCTTAGGAT
  R
  TGCTTCCCAG GTTTCTGAGT CTCTGGTGTT CTGACAAGAG CTCTGGCTGT GGATTCCAAA
  GCCCCCGCTG CTTGCCTTGG TCTTCAGTTT TCCTAGTCTT CTAAACGGAA GCATTCATAA
  TTCCTGCACC ACAGGGTCTC TGCGCATTGG AGTGGTCCTG GTAAAGTGCC TTACAGTGTC
  TGGCCTGGAG TTAAGCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60963566	NES16158050	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51328913					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60963566	NES16158050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5083936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	within coordinates
Epn1	epsin 1	within coordinates
Rr167875	regulatory region 167875	within coordinates
Tssr64418	transcription start site region 64418	1563 bp downstream
Tssr64419	transcription start site region 64419	1440 bp downstream
Tssr64420	transcription start site region 64420	639 bp downstream
Tssr64421	transcription start site region 64421	553 bp downstream
Tssr64422	transcription start site region 64422	985 bp upstream
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	999 bp downstream