rs51331003 SNP Detail

Summary

• ID
  rs51331003
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107462236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAATGA ATTCCGTATT
  ACATTATTAT ATCTTATGTC AGCAAAATAG CAGATGCTTA TGTTAGCCAC ATGGGGGCAT
  CAGATTGTTT CATATGAAAG GGATATCAAA AAATCAGTTA CTTTAATAAA AACCGAGGTT
  CTCCCGGTTC CTTCGAGCTC ATCGTCTCTG CCGTCCTCTG ACTTTTAATT TCCAGGACTT
  K
  CCTTCTGCCA TGTCGTCTGA AGAAGGGAAA CTCTTCGTAG GAGGGCTCAA CTTCAACACC
  GATGAACAGG CACTTGAAGA CCACTTCAGC AGCTTTGGGC CTATCTCTGA GGTGGTTGTT
  GTCAAGGACC GGGAGACTCA AAGATCCCAG GGTTTTGACT TCATCACCTT CACAAACCCA
  GAGCATGCCT CAGATGCGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61045670	NES16080034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51331003					SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045670	NES16080034	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107462236 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	10 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	1030 bp upstream
Rr652939	regulatory region 652939	117 bp distal
Tssr68454	transcription start site region 68454	62 bp downstream