rs51333304 SNP Detail

Summary

• ID
  rs51333304
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57719440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC ACTTCAGTTC TTTGCCTCCC
  T
  CTTTCTCACA GTTTTGATTG GTATT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132181236	ENSMUSSNP1453653	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323685752	CHEV_11_57642116	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51333304					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57719440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	254 bp distal
Cpgi2911	CpG island 2911	459 bp proximal
Hand1	heart and neural crest derivatives expressed 1	99 bp downstream
Rr447811	regulatory region 447811	857 bp distal
Rr447812	regulatory region 447812	97 bp distal
Rr447813	regulatory region 447813	332 bp proximal
Rr447814	regulatory region 447814	871 bp proximal
Tssr3506	transcription start site region 3506	656 bp downstream
Tssr108123	transcription start site region 108123	342 bp downstream
Tssr108124	transcription start site region 108124	403 bp downstream
Tssr108125	transcription start site region 108125	435 bp downstream
Tssr108126	transcription start site region 108126	621 bp downstream
Tssr108127	transcription start site region 108127	694 bp downstream
Tssr108128	transcription start site region 108128	701 bp downstream
Tssr108129	transcription start site region 108129	832 bp downstream