rs51334759 SNP Detail

Summary

• ID
  rs51334759
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191822676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGAGGGCG GGGAGGCGGC CTCTGCCCTG TCTCAGCTGA
  AGGAATTTGG CCTGCTGAGG CGGGGCCGCG GGGCGGGAGC TGCTCCCGTG ACCGGGAACC
  S
  GGGATGGCGG TCTCAGGAGC TGCTCCGGTG AGGAGCGGCG GGGATGGCGG CCTTTGACAG
  GAGCTATGAG GATGGCGGCC TTGGACCGGA GCAGCTCCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146513869	ENSMUSSNP3788593	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320197036	CHEV_1_193962261	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51334759					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191822676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	within coordinates
Gm10516	predicted gene 10516	within coordinates
Gm37055	predicted gene, 37055	1555 bp downstream
Rcor3	REST corepressor 3	317 bp upstream
Tssr15823	transcription start site region 15823	749 bp upstream
Tssr15824	transcription start site region 15824	446 bp upstream
Tssr15825	transcription start site region 15825	412 bp upstream
Tssr15826	transcription start site region 15826	332 bp upstream