rs51338328 SNP Detail

Summary

• ID
  rs51338328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:72542563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACCTTA CTCAAACTGA
  AACAACTGCA TCTCCCTGAC TCCTCCTCTT CTCACATAAA CGGGTCTGCT TTCAGCAGGA
  ACTCAGGAGA TCAGGGAGCC CACAGATGCC CCTGCCCCTG CTCCAGACAC CATGTAAGAG
  TGACACATGA GTAGCTGCTT TCCTAGGAGG CAGGGCTCTG GTCCAGCCGT GCACAGCTAG
  Y
  TACTGATCCC TCAGAGAAAG CCTAGGCAGA GGGACGATGT GGGTACACGG ACGCAGCTTG
  AGAAGGCTGC AGAGTACCAT GCAACCAAAC AGGAATGCTC GGTGAGGAAA TTAGTCAGGA
  AGAGAAAGGA CTTCCCGTGG ACTTTGTTGG AAACATTACA CTTGATGATC TTTAGCGCGT
  ATGTGGTGGC TGCACAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148102873	ENSMUSSNP5326384	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51338328					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72542563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7154	CpG island 7154	1956 bp distal
Trappc9	trafficking protein particle complex 9	within coordinates