rs51338354 SNP Detail

Summary

• ID
  rs51338354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCATGA GGTAACTCTT
  TACACCTTTA AAAAGATGTT CTGATGGAGT AATCATCAAC ACTGAGTAGA GTGCCTTTTG
  TACATGGAGC CTCCTGCCAT CCTTCACTGT GCTCAATCAG CCCAGGCTCT GTGCTGATCC
  CAGACCCTCT TAGAGCATCA TCTGGTGATG CTCACACGGA TGCTAGTCAA CCAAAGAAAG
  R
  GGACACAATT TCAGGTCAGA GTGGACAAGT TCATAGCCTC CTTGGGGAAA CTGGCAGTAT
  CTAGGGAATC CATGGCAACT TCACAGGAGT TTATTAGTAA ATAATGATAC ATAAAGTAGC
  TGATTCCACA CAACCCCATC CCTTCAGCAC ACCGGAAAGA ATTGCATTTT GTACTCACCC
  TATGCAAAAC TGTGGGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693534	ENSMUSSNP5882774	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51338354					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	656 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	435 bp proximal
Rr501589	regulatory region 501589	1332 bp proximal
Rr501590	regulatory region 501590	1895 bp proximal
Tssr4586	transcription start site region 4586	1581 bp upstream
Tssr131170	transcription start site region 131170	1167 bp upstream
Tssr131171	transcription start site region 131171	1198 bp upstream
Tssr131172	transcription start site region 131172	1280 bp upstream
Tssr131173	transcription start site region 131173	1306 bp upstream
Tssr131174	transcription start site region 131174	1355 bp upstream
Tssr131175	transcription start site region 131175	1494 bp upstream
Tssr131176	transcription start site region 131176	1545 bp upstream
Tssr131177	transcription start site region 131177	1594 bp upstream
Tssr131178	transcription start site region 131178	1623 bp upstream
Zfpm2	zinc finger protein, multitype 2	1328 bp upstream