rs51340536 SNP Detail

Summary

• ID
  rs51340536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:15638995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAAGTT TGTGACTCTT
  CCTTTGTTTG AAGACCTTGA AGTAATGAGA ACTGAGGTAA CTCTTTGAAG TCTCAGGACT
  CTTAACCCAG TTACATCAGG CAGAGACAAC TGACCTCAAG AAAGTTGAGG ATCCCTGTTT
  TATTTTCTCG TGATCTAATC GATTAACTAT GTTCCTTCTA AGGTAATCAT AGCATTTCCA
  Y
  TAGCAGTTCA GACACACTCG TGCTGCATCT GCGTCATGTT TCCTCCCTCT GGATTCTCTA
  ACCGGGAGGA GAGGGTTGCC TGAGCCTTTC TGAGGCTCCC CTCCCAGCTG TTAGACTTGG
  TGGAGCAGTA AAGGTGGCTC CCCCAGGAGA GGGAAGAGCA CAAGGCATGA CAGCATCTGT
  GCGCTTGAGA ACATTTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136207099	ENSMUSSNP3096166	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51340536					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15638995 () rs orientation: forward

Symbol	Name	Function Class
Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Intron
Tssr83873	transcription start site region 83873	1652 bp upstream