rs51342539 SNP Detail

Summary

• ID
  rs51342539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31768236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCGGGG CGGGCCCAGA
  ACGCGCAGGC AACTGCGGAT TGGTGCTGGA TACAGTGACG CACCCCGCGT CTAGCCAATG
  AGCGGGCGGG GGAGGCAGGG GTAGGTTGGG TGGTAAGAGG TGGTAAGCGG AGCGGCTGCT
  GGCCGTAGGG TGAGTGTGGC TGGCGGGCGG GCTGAACTGA GGCGGGCCGG GGACGCGTTC
  Y
  GAATTGCGTT CCCTCCGTGC CTGCAGAGCC CCTCGAGCCC TTCGTGGCGG CTGCATATAA
  AAGGGCACAC TGCTTATCTT GCCGAGAGGA CTCCGTAGGA CGTTTTCTCC GGGAGACAGA
  GCTTCGACAC CCGGGGTGTC TGGAAACGTG TGTCCTGGGA TCTCGGAGGG GAAATGGGGA
  TAACTGGGGT AGACCGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012826	NES17430067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51342539					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012826	NES17430067	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31768236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	within coordinates
Gm58914	predicted gene, 58914	199 bp upstream
Rr370349	regulatory region 370349	566 bp downstream
Rr405571	regulatory region 405571	739 bp downstream
Rr405572	regulatory region 405572	85 bp downstream
Rr535278	regulatory region 535278	993 bp distal
Rr535279	regulatory region 535279	790 bp distal
Rr535280	regulatory region 535280	210 bp distal
Rr535281	regulatory region 535281	702 bp distal
Rr535282	regulatory region 535282	within coordinates
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	820 bp downstream
Tssr150349	transcription start site region 150349	812 bp downstream
Tssr150350	transcription start site region 150350	793 bp downstream
Tssr150351	transcription start site region 150351	45 bp downstream
Tssr152716	transcription start site region 152716	372 bp upstream