rs51342734 SNP Detail

Summary

• ID
  rs51342734
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTTGTC TGATCTGGGC
  ACTGAAACTG AGGCACAGAA GGAACCAGAC TCCTAATGAA GGTGGGGATA CCGTAACCCT
  CCTTTTGACT AGAATCTCTT ATCTCGTGAA GGGCTTGGGA TTATCCCGGG GAGCCTTACC
  TTTGCAGCCG AGTTGTTCTC ATGGTCGCGG GCCTGGGGAT GGGGGTGAAC TGGAGACCCT
  G
  GGGTCATTTA TTCTTTTACC GTTTTTCCTT CTCTCTGACA GTGCTTTTAG GGCTGTCTCT
  TAGAGAAGCA GAATACTTTT AATAAGTTTC TTCTTTGAAC TTAATAGTTC AATAATAATA
  ATAATAATAA TAATAATAAT AATAATAATA ATAATAATAA AGCAGCTTAC AGAAGTAGAG
  GAGATACTAA GATGCCTCAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145938515	ENSMUSSNP264966	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51342734					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	342 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	994 bp distal
Rr530825	regulatory region 530825	1184 bp distal
Rr530826	regulatory region 530826	428 bp proximal
Rr530827	regulatory region 530827	1493 bp proximal
Tssr145810	transcription start site region 145810	1006 bp downstream
Tssr145811	transcription start site region 145811	974 bp downstream
Tssr145812	transcription start site region 145812	944 bp downstream
Tssr145813	transcription start site region 145813	904 bp downstream
Tssr145814	transcription start site region 145814	889 bp downstream