rs51342781 SNP Detail

Summary

• ID
  rs51342781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCCCAA CTTTACACCT
  TGACGCGGGC GGTTGCCTCC GCTCCTTTCC CCCGCCCCCC CCCCCCCCAC CCGCAGGCTC
  GGAGACCAGT CTATTAGCAT GTTCGGTCCC ATAATGCTTT GCTTCATTTC CGCTGCTTAA
  ATCTTAAATA AAACCAGCAC GCCTCTCCGT TCTATCACAT AGAGAATGCC AAGAGAATGT
  Y
  CTTGCTGCTC TCATTTCCAG GGTAGCGATA ATGGAGGGTT TTCCCGTTTG CTCGAAACCC
  CCTTTTTGAA ATAGGGTCCT CGTCTGCTAG GAACGTTGCG CTGGGGCGGG AGTTCTTTAG
  CTTTGCGCAG TGGCAGTATC GTAGCCAATG AGGTTTATCC GAGGCGCGAT TATTGCTAAT
  TGAAAACTTT TCCCAATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60828973	NES16028206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51342781					SNP	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60828973	NES16028206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	481 bp proximal
Gm24265	predicted gene, 24265	119 bp upstream
Gm24407	predicted gene, 24407	914 bp upstream
Gm57305	predicted gene, 57305	293 bp downstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	999 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	18 bp downstream
Tssr48293	transcription start site region 48293	116 bp upstream
Tssr48294	transcription start site region 48294	191 bp upstream
Tssr48295	transcription start site region 48295	891 bp upstream
Tssr48296	transcription start site region 48296	986 bp upstream
Tssr52808	transcription start site region 52808	408 bp upstream
Tssr52809	transcription start site region 52809	391 bp upstream
Tssr52810	transcription start site region 52810	213 bp downstream
Tssr52811	transcription start site region 52811	490 bp downstream
Tssr52812	transcription start site region 52812	603 bp downstream
Tssr52813	transcription start site region 52813	615 bp downstream
Tssr52814	transcription start site region 52814	651 bp downstream
Tssr52815	transcription start site region 52815	845 bp downstream
Tssr52816	transcription start site region 52816	1004 bp downstream