rs51343779 SNP Detail

Summary

• ID
  rs51343779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43213381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCTACA GCAACACAGT
  GAGGCCATGT CTCAAAAAGT TGGGGACTGG GGAGGGCTGT GTCTGAACAG CTTAGCAAAG
  CTCAGAAAAA GGAGCAGCCT GAGCAGCTTG CTCGTTCTCA TGTGTCTTTC TGTGTGGGTT
  CTGAGGGCAG GCTGAGCGTC ATATCACTGC AGATCCCCAG TGCCCATGGT ACACACCTGC
  R
  CCCTCACTGT GGCATCAGCG AGGTTAATTC CTTATCTCCT CACAAGTCAA AGGTACAGCA
  GCTGCAGTGA ATCCTTCCTA ACTATCGTGT TTGGCGTGTA ATTCAGGGAA GGGGAGTTGT
  TTGGGGTTTT GGCATGTGTG TTGTATGTAG TCTATGCATG TGGGTGTGGG CATAGGTGCG
  AGTCTGTAAG TGCACCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002037	NES16129030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51343779					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002037	NES16129030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43213381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18937	CpG island 18937			1309 bp distal
Rr645990	regulatory region 645990			1691 bp distal
Rr645991	regulatory region 645991			832 bp distal
Tssr66014	transcription start site region 66014			1675 bp downstream
Tssr66015	transcription start site region 66015			1640 bp downstream
Tssr66016	transcription start site region 66016			1617 bp downstream
Zfp175	zinc finger protein 175			Intron
				mRNA-UTR