rs51345861 SNP Detail

Summary

• ID
  rs51345861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60870218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCGAAGA GCCAAGCACC
  AAGGGACCCA ATAGCTTAAG AGCTTAGGGG CTGCACGTGC AAGCGCCAAG TTCCAGCAAA
  AAGCCTCTGG CCTGAGAACG CTAAGTCTCT GGGTCAAAGC CAGAGCTGTC ATCCATCCCC
  AGTGGTGGTG AGTTAGAGTG ACATATTTAG GGGTTTATAC AAACAGTCCA AAGCCACTGG
  Y
  GGGCTGGTGC TCCAGCTGCT GAAGGGCTAG TCCCTGAGGA CTCTACCTGA ATAAAGCGAG
  AGGCCCTCAG CCTGAGATCC GTGACACTCT CTCGGAACAA ATGCTCGTGA ACAAGTAAGT
  ACTTTTTAGC AACAATCCGA TGAGCAGGAC CCTAAAGTTC AAAGTCAGGC CCATCCATCC
  CTACCTCTTT CAACCTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52344293	NES15283547	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51345861					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52344293	NES15283547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60870218 () rs orientation: forward

Symbol	Name	Function Class
Gm20610	predicted gene 20610	within coordinates
Gm20611	predicted gene 20611	within coordinates
Rr219922	regulatory region 219922	within coordinates