rs51348879 SNP Detail

Summary

• ID
  rs51348879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8687104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATAAAA AGACAAATGT
  TTACCTATAA ACCATACATT ATAATCCATA GACATAATAT AGATTCAGGA AGTGACTCCA
  CCGTGACAGG ACGTGGCCAT ACCATGACCA GACATGAGAA TACTGGGATA GGAAGTGGCT
  GCACAGTGAC AGGAAGTGAT TATACCCTGA CCGGAAGTGA CCATGTTGTC ACATGAAGCG
  R
  CCACACCATG ACCAGAAGGG ACTGGAAGTG ACCGTGTCGT CACAGGAAGT GGCTACAGCA
  TGACCAGAAG TGACCGTATC ATAACTGGAA GTGGCCGTAA CATCAGGATT TTCTTCCTGT
  TTTTGTTGTT TCTCAGCGTC GGTATGGTTT TGGAGTAGGC AAACCTGCCT GAGTCGTACA
  GAGCATCGAG GCCGAGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347600	NES16951223	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51348879					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347600	NES16951223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8687104 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Rr403226	regulatory region 403226	1678 bp upstream
Tssr112727	transcription start site region 112727	160 bp upstream
Tssr115717	transcription start site region 115717	65 bp upstream