rs51350734 SNP Detail

Summary

• ID
  rs51350734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130041649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCCAC CCCTGGTATC
  TGCACTCAGC CTCCAGGAAG CCTGTGTTGG ATATATCTAT GCTATGCAGT TGTAAAACAA
  TATCTTTCCA CTGATTAAGC TACTAAATTA GTGGTGATGT TATTTTCAGT AGGTAGACAT
  CTACTGAAAT TCCTGTAGAT GTATAAAACC TTCATTGTGC TGAAAGTTCT CTAATCCAGG
  R
  GCATTTGTGA AACTTCTCCA GATATTAAAC CTTCAGTTAC TTGCAGGGAG AAGAAACAAT
  CACTAGATTG TGTGCACTGC AAGAGGGCAT GTAGGGGTCT CAACACCTCT TACATACATT
  TTCAAAGATG CTCTAGTGTT TCACCCCATC TTTACCCCAA TGACCCTTCC CCAAATACTT
  GGTACTACAA ATGTTGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145472981	ENSMUSSNP6971520	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319970938	CHEV_1_132010489	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51350734					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130041649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			55 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant