rs51352044 SNP Detail

Summary

• ID
  rs51352044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75120266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCACCCTGCT ACTTGAGGGG AGGCACAGGA AGGCCATTTA
  TCTCCTAAGG CATCCTGTAT GCCCTTCCAT CGTTTTTTTT TTTTTTTTTT TTTTTTTTAA
  R
  AAAATTGCCT GAAATGAGAA TTGTTTCTTT TCCAAAATTA ATGTTCTTGT GAGTTTAGTA
  GTCAAAACTA TATAGCATTT AAAGCTGGGT TCAGAAACAG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144691926	ENSMUSSNP5736567	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51352044					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75120266 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	892 bp upstream
Cpgi410	CpG island 410	1555 bp distal
Cpgi411	CpG island 411	110 bp distal
Gm57175	predicted gene, 57175	1383 bp downstream
Retreg2	reticulophagy regulator family member 2	within coordinates
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	1917 bp downstream
Tssr7485	transcription start site region 7485	1824 bp downstream
Tssr7486	transcription start site region 7486	1139 bp downstream
Tssr7487	transcription start site region 7487	1103 bp downstream
Tssr7488	transcription start site region 7488	880 bp downstream
Tssr7489	transcription start site region 7489	849 bp downstream
Tssr7490	transcription start site region 7490	825 bp downstream
Tssr7491	transcription start site region 7491	798 bp downstream
Tssr7492	transcription start site region 7492	785 bp downstream
Tssr7493	transcription start site region 7493	351 bp downstream
Tssr12354	transcription start site region 12354	1974 bp upstream
Tssr12355	transcription start site region 12355	1879 bp upstream
Tssr12356	transcription start site region 12356	1819 bp upstream
Tssr12357	transcription start site region 12357	1268 bp upstream
Tssr12358	transcription start site region 12358	1198 bp upstream
Tssr12359	transcription start site region 12359	897 bp upstream