rs51355536 SNP Detail

Summary

• ID
  rs51355536
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTGTCA TGGCTGAGAG
  GAATAGGAAA CAGAGGTGAC AAATTATCTG CAAGAGCAGG CCCTGGTCTC TAGATCAAGA
  GATCTTGATC AAGAAATCAA GAGATCTGCT CTCCAGATTG ACTGTCATCA ATGTTTGGCA
  TCATGGTAGC ATGAGCTGAG ACCAACAGGA AGACACTCCA CGTGGGTGGC CAGCTTTCTA
  G
  ATGTCCGTGG GGGTGAGGGG CGCTATAACA TGGGGGATTT CAGTCAGAAC AACCCAGGTC
  ACTCAGGCCA TCATGCCATC ACTGGGGTTC AGCCACGACA CCGTGAGTCT GTCAGGTATC
  AGTCAGGGCA CTCCAGCCAC CACAAGCCGT CGGGGTTCAG TCAGGTCCCG GTGAGTCTGT
  CAGGTATCAG TCAGGAAACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148343907	ENSMUSSNP5754846	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51355536					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	756 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	544 bp upstream
Rr572131	regulatory region 572131	1406 bp distal
Rr572132	regulatory region 572132	1017 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	269 bp proximal
Rr572135	regulatory region 572135	555 bp proximal
Rr572136	regulatory region 572136	664 bp proximal
Rr572137	regulatory region 572137	738 bp proximal
Rr572138	regulatory region 572138	863 bp proximal
Tssr28035	transcription start site region 28035	545 bp downstream
Tssr28036	transcription start site region 28036	616 bp downstream