rs51358360 SNP Detail

Summary

• ID
  rs51358360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGAGTG TGACGCCCCC
  AGGACCCCAC TGCGCCCAGA CAGAAGTCAT GTGAGTGTCT CCCTGGATAG CCTCTGCCAT
  GGCCAGAGTT GCCCAGACCC TCCTGCCGCC CCATGCTCAC CCTAAAGAAA CCTCGTGCCT
  TATAATGATC CCCACATCTC TCTGCAGAGC CACTCTCAAG GGCGGTCAAA AAGTTTGCCT
  Y
  GACCCTGAAG CCCCCCTGGT TCAGAAAATC ATCCAAAAGA TACTGAACAA GTGAGTCGCG
  ATTTGTGCTT ACACCTGACT GGCACCCGAT TTCTGAAAAT TATAGCAGGG AAAATCAAGG
  TTAACTTCAG TTCAGGAACC TGAATTATTA TTTTCATTGT TAACTTTGTC CTGTGAGCAT
  CAGTTTGAAT TGATAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198265	NES16702727	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51358360					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198265	NES16702727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052249 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1186 bp upstream
Tssr47224	transcription start site region 47224	681 bp downstream
Tssr47225	transcription start site region 47225	579 bp downstream
Tssr47226	transcription start site region 47226	510 bp downstream
Tssr47227	transcription start site region 47227	316 bp downstream
Tssr47228	transcription start site region 47228	253 bp downstream
Tssr47229	transcription start site region 47229	232 bp downstream
Tssr47230	transcription start site region 47230	207 bp downstream
Tssr47231	transcription start site region 47231	177 bp downstream
Tssr47232	transcription start site region 47232	30 bp downstream
Tssr47233	transcription start site region 47233	within coordinates
Tssr47234	transcription start site region 47234	48 bp upstream
Tssr47235	transcription start site region 47235	798 bp upstream
Tssr47236	transcription start site region 47236	818 bp upstream
Tssr47237	transcription start site region 47237	867 bp upstream
Tssr47238	transcription start site region 47238	873 bp upstream
Tssr47239	transcription start site region 47239	933 bp upstream
Tssr47240	transcription start site region 47240	945 bp upstream
Tssr47241	transcription start site region 47241	960 bp upstream
Tssr47242	transcription start site region 47242	997 bp upstream
Tssr47243	transcription start site region 47243	1020 bp upstream
Tssr47244	transcription start site region 47244	1054 bp upstream
Tssr47245	transcription start site region 47245	1074 bp upstream
Tssr47246	transcription start site region 47246	1125 bp upstream
Tssr47247	transcription start site region 47247	1169 bp upstream
Tssr47248	transcription start site region 47248	1232 bp upstream
Tssr47249	transcription start site region 47249	1302 bp upstream
Tssr47250	transcription start site region 47250	1440 bp upstream
Tssr47251	transcription start site region 47251	1504 bp upstream
Tssr47252	transcription start site region 47252	1556 bp upstream
Tssr51810	transcription start site region 51810	1247 bp upstream
Tssr51811	transcription start site region 51811	1193 bp upstream
Tssr51812	transcription start site region 51812	163 bp upstream
Tssr51813	transcription start site region 51813	146 bp upstream
Tssr51814	transcription start site region 51814	817 bp downstream
Tssr51815	transcription start site region 51815	851 bp downstream
Tssr51816	transcription start site region 51816	885 bp downstream