rs51358861 SNP Detail

Summary

• ID
  rs51358861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53872487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTTAAAA ATTCTTAGAT AAAGGACACT AAGAACATAT
  AAGAGAACCT GGATTTCCCC AGTAAGTAAT GTTTTAATGA CATTATTGTA GAAACTTGAA
  R
  AACAAACAAC CAGAGGACAG TGATGTAAAA CCTGAGCTTT TTCGGGAGGC AGAGGCAGGA
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62790770	NES17344597	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51358861					SNP	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62790770	NES17344597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53872487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	1283 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	1402 bp upstream
Rr339992	regulatory region 339992	513 bp proximal
Tssr5169	transcription start site region 5169	440 bp upstream
Tssr145221	transcription start site region 145221	1277 bp upstream
Tssr145222	transcription start site region 145222	1517 bp upstream
Tssr145223	transcription start site region 145223	1800 bp upstream
Tssr145224	transcription start site region 145224	1829 bp upstream
Tssr145225	transcription start site region 145225	1855 bp upstream