rs51359252 SNP Detail

Summary

• ID
  rs51359252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89813701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTACTT TATATTATGT TAACAGGTAT GAGACTGGGT
  AGTGGCTGTA ATTCCTCTTT TTCCCCCCCT TATCTCTTTT GTTCTGATTT TTACTAGGCA
  S
  CTGGGTAAGC ATTTGCAAAT TGATAAGTAT TAATGCCAAA TCTTAGTTTT ATGTGTGTAT
  ATCTGTGTGT GAGTGTATAT GTATGTTATA AAGTGTAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61031657	NES16093381	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	C	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51359252					SNP	G	G	G	G	C	C	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031657	NES16093381	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89813701 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1419 bp downstream
Tssr67721	transcription start site region 67721	1336 bp downstream
Tssr67722	transcription start site region 67722	398 bp downstream
Tssr67723	transcription start site region 67723	1012 bp upstream
Tssr67724	transcription start site region 67724	1559 bp upstream
Tssr67725	transcription start site region 67725	1604 bp upstream
Tssr67726	transcription start site region 67726	1617 bp upstream
Tssr67727	transcription start site region 67727	1681 bp upstream