rs51359408 SNP Detail

Summary

• ID
  rs51359408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76474588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCCTGG CGTCTCGCTC
  TGGGGCTATG TTGTAGAGGA GAATGAGAAA CCTGGCAGGA AAAGAATCTT CTCGTGAGGT
  TGGCTGCAAA AACAAAATAC AAGAAAAAAG AAAGAAACAA ACAAACAATA AAAACAACAA
  CAAACCCCTG ATGTCACTTT AGCTGCCTGT CCACACAGCA GCTAAAATGA CCGCAGACTT
  R
  TGCCAATGTG AATATGCCTC AGAGGTGGAT TATTGAGTGG AAAGAAGATG CAGAGGGACT
  ACCAGTTGGG TGGCATTTTA TCAAGTTTTA AACATGCAAT GAAAGGTGGA TATAAAAGGT
  GTATGGATAC TCTATATATT TTTTATAGAT AGAACAATAT ATTATAGATT GGATTTTTTT
  AAAGTTTTAT TTTATGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63183989	NES17459532	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	A	A	A	G		G	A	G	A		A
ss325700416	CHEV_18_76501171	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51359408					SNP	A	G	G	G	A	A	A	A	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183989	NES17459532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76474588 () rs orientation: forward

Symbol	Name	Function Class
Gm58741	predicted gene, 58741	1987 bp upstream
Rr347326	regulatory region 347326	588 bp distal
Rr355557	regulatory region 355557	1589 bp distal
Tssr151998	transcription start site region 151998	1538 bp upstream