rs51359940 SNP Detail

Summary

• ID
  rs51359940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:96287217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCACACCT CTGAACCCTT CTCCTTCTTC
  TTTCTTCCTA ACTGGATGGA GGGGAGGGAG GACCAGCGTC CCTCCCTCGG GAAGAAGAGC
  TGTACTGGCT CTACAGCTTC CTGCCCCCTG CCACAGCTGC AGTTACTCCG TCTGCTCACC
  R
  GGCCTGCCAT ACTGCAGCCT TCCGTTTCCT GAAGGAGCAG TCCTCTGGGG CTCAGGAGTT
  CTACCCCACA GATATCTCAC GCATGGCAAG AAGGCCGAGG CTTAGCCTAC TTACCAGTCA
  GTCCCCTTGA CTGGAAGAGT CAGGAAAACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60650948	NES16266191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		G	G	G	G		G
ss322811813	CHEV_8_98084489	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51359940					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60650948	NES16266191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96287217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc113	coiled-coil domain containing 113			1699 bp downstream
Prss54	serine protease 54			Intron
				Noncoding-Transcript-Variant