rs51361690 SNP Detail

Summary

• ID
  rs51361690
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44059083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG TAGAGGAGTT TGTGAACTCC
  C
  GAGGACTTCA TTTTCACCCT AGACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146433204	ENSMUSSNP6535326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325817171	CHEV_19_44145134	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51361690					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44059083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	470 bp distal
Erlin1	ER lipid raft associated 1	859 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	774 bp distal
Rr548151	regulatory region 548151	383 bp distal
Rr548152	regulatory region 548152	146 bp distal
Tssr159429	transcription start site region 159429	1222 bp upstream
Tssr159430	transcription start site region 159430	969 bp upstream
Tssr159431	transcription start site region 159431	936 bp upstream
Tssr159432	transcription start site region 159432	857 bp upstream