rs51362789 SNP Detail

Summary

• ID
  rs51362789
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63326920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG TATTCTAGAG ATACCAGCTC
  K
  GTTCTCTCCA GGCTCCCCTG GACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146443712	ENSMUSSNP4389140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51362789					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63326920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	1190 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1433 bp upstream
Rr398308	regulatory region 398308	1954 bp upstream
Rr593544	regulatory region 593544	523 bp proximal
Rr593545	regulatory region 593545	1977 bp proximal
Tssr37559	transcription start site region 37559	922 bp upstream
Tssr42046	transcription start site region 42046	1310 bp downstream
Tssr42047	transcription start site region 42047	1327 bp downstream
Tssr42048	transcription start site region 42048	1505 bp downstream
Tssr42049	transcription start site region 42049	1531 bp downstream
Tssr42050	transcription start site region 42050	2000 bp downstream