rs51363071 SNP Detail

Summary

• ID
  rs51363071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99142289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTTTTT TTAACAAACT
  TTTTTTTATC AAACTTGAGT CTCTACTTCC AAAAGGTTCT TCTTGGGCTT TTTCTTTATG
  TCAATCTCTT GGGTGCATCC ATCATCTTTG GTGTCATTTC TGTTGATAAA AACCATATCC
  ATTTCCTATA GTGAACTGAT TTAGGATCCT AGTGCCTCTC TTGTCCCCTG CTGCTGCATG
  Y
  GTAGTTACCT ATGGAGCCTA GCTTGGTGTC TGGGGGTGTG GAGGAAGGGT GGCTGCTGAG
  TCTCTGTTTT GCTGTTCATT TTTGAGTTGA TGGTGATTGG GTAGGCTCTG GCAGCTGTGG
  TTCCTCTGGG GGTTGACGAG CAGTGATGGT CGGGAGACTG GAGGCTAGGT GTGGCTGCTT
  AGACATCTCC CTGGCTTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61445189	NES16826078	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	C	C		T
ss323135187	CHEV_9_99160655	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51363071					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445189	NES16826078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99142289 () rs orientation: forward

Symbol	Name	Function Class
Cep70	centrosomal protein 70	within coordinates
Gm18914	predicted gene, 18914	709 bp downstream
Gm47199	predicted gene, 47199	29 bp upstream