rs51366957 SNP Detail

Summary

• ID
  rs51366957
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25788379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTTTCCA GCACTATTTG CTCATCCAGT CACCCACCAC
  TGCTACCACC GCCGCCGCTA CCACCACCAC CACCAATCTC TCTCAAGAAA GACAACAGGA
  S
  CCAGTGAAAA CTATACTTCG ACAAAGGCAA GGAAGGCTTT CTGGAAACCA GCCATCCCAA
  GTTGCCAGGA GTGATGGAGA AACTCCGGGA GATTGTCCTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552847	NES16573403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51366957					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552847	NES16573403	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25788379 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1			1406 bp upstream
Cpgi8770	CpG island 8770			1375 bp distal
Cpgi8771	CpG island 8771			388 bp proximal
Rr523606	regulatory region 523606			1414 bp distal
Rr523607	regulatory region 523607			1274 bp proximal
Rr523608	regulatory region 523608			1635 bp proximal
Rr523609	regulatory region 523609			1749 bp proximal
Sox8	SRY (sex determining region Y)-box 8			Intron
				Noncoding-Transcript-Variant
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst			within coordinates
Tssr143165	transcription start site region 143165			1417 bp upstream
Tssr143166	transcription start site region 143166			1469 bp upstream
Tssr146845	transcription start site region 146845			1273 bp downstream