rs51367474 SNP Detail

Summary

• ID
  rs51367474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122522424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGGGTCC TCTCCACCAA GAGTTGCTTA AGGAGAAAAG
  TGAGGTGGGG CTGTCCCTGT ACTACTAAGA ACGAAGAAAA ACAATCACGT TAACTTTTTC
  Y
  CACACTTTCT AGTGAAGCTC CTGCCTCTTG CCTTCTGGAC TGTAGATGAG TCCTCACTGT
  GATCTTTCTG TCCTAGAGTT GGTTGGTTGG GAATTGCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748501	ENSMUSSNP2925884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320914167	CHEV_3_122431693	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51367474					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122522424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	17 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	398 bp upstream
Tssr31509	transcription start site region 31509	169 bp upstream
Tssr31510	transcription start site region 31510	229 bp upstream
Tssr31511	transcription start site region 31511	344 bp upstream
Tssr31512	transcription start site region 31512	388 bp upstream
Tssr31513	transcription start site region 31513	423 bp upstream
Tssr31514	transcription start site region 31514	934 bp upstream
Tssr31515	transcription start site region 31515	1075 bp upstream
Tssr31516	transcription start site region 31516	1095 bp upstream
Tssr31517	transcription start site region 31517	1143 bp upstream
Tssr31518	transcription start site region 31518	1272 bp upstream
Tssr31519	transcription start site region 31519	1338 bp upstream
Tssr31520	transcription start site region 31520	1361 bp upstream
Tssr31521	transcription start site region 31521	1441 bp upstream
Tssr31522	transcription start site region 31522	1477 bp upstream