rs51368089 SNP Detail

Summary

• ID
  rs51368089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACTGAG AGCACTCTGA
  GTATCTCAAC CCAGTTGAAC AACTAAAAGC TGTCACTTTA GTTTAGTTTG CCAGCTCATG
  GATCCAGTGG GGCAGGTGTG CCTTATAAGG CATCTTACCC ATAGAGGATG TTAAACCAAG
  ACCCTGGTCT GTAAGGGATC TCTGAAGTAT ATGGGCTCAT TGAGTTGGCA TTTTGGGCTG
  W
  ACAGCCAATA CTCTAGAGAT ACAGGCAGAA GGCTCCTGAG TTCCGGGTCC GCCTGGGCTA
  CTTAAGGTTT ATTGACTCAT CACAGTGCTA ACTAGATAAA AGAAATGAGT CCAGGAACAT
  CTTCAAAAGT TTCAGAAGGA GGGCTAGCAA GCAGCTGGAA TGAGGTCTGC TGGACCTAGA
  ATTAAGAGCA TTTTCAGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148555699	ENSMUSSNP3511685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51368089					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	992 bp distal
Prr36	proline rich 36	976 bp upstream
Rr658993	regulatory region 658993	633 bp distal
Tssr80256	transcription start site region 80256	1432 bp upstream
Tssr80257	transcription start site region 80257	1392 bp upstream
Tssr80258	transcription start site region 80258	1309 bp upstream
Tssr80259	transcription start site region 80259	1267 bp upstream
Tssr80260	transcription start site region 80260	1183 bp upstream
Tssr80261	transcription start site region 80261	1134 bp upstream
Tssr80262	transcription start site region 80262	932 bp upstream