rs51369580 SNP Detail

Summary

• ID
  rs51369580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5642226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTGTT TTTTGTTTTT
  TAAATAATGT GTGTTTTTAA AAAAACAAAA CAAACAAAAA AACCTTAGTA TCTGGAGTAT
  ATTAAAGGAG AACTTGGGAG CAAAATTGGG TGGAAGACAA AGAAAGCAAA CAAATCCCTT
  TTTAACAAGT AACCTGACAG TGTAGAAAAC ACTGTAGGAG GAGCTCCAGT TTGCTACAGT
  R
  GGTATGGAAT ACAGATAGGG ACTGCAGGGA TGTGTCTAGA GATGCACCAG TATACCCACC
  CCATGGTGAC CACTATCTTC TTGTGATTGG TTTGAAATAC AGCCTACTCT AACTGTAAGG
  TATGGACACG ATTCTAAGAC AGCTTAAAGG GATACAAAAT ACTCATCAAT TTGATGCATT
  GGCCATTATA TTGAAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134543016	ENSMUSSNP5155539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320638405	CHEV_3_5577166	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51369580					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5642226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	402 bp distal
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	1049 bp distal
Rr573199	regulatory region 573199	437 bp distal
Rr573200	regulatory region 573200	772 bp distal
Rr573201	regulatory region 573201	643 bp distal
Tssr28281	transcription start site region 28281	1253 bp downstream
Tssr32526	transcription start site region 32526	1056 bp upstream
Tssr32527	transcription start site region 32527	1004 bp upstream
Tssr32528	transcription start site region 32528	983 bp upstream
Tssr32529	transcription start site region 32529	935 bp upstream
Tssr32530	transcription start site region 32530	922 bp upstream