rs51369777 SNP Detail

Summary

• ID
  rs51369777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTT CTGATTTTCT CTACATAGAT
  Y
  TTAGCTAAAA ATAGCACAGG GTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60435747	NES15935081	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C	C	T		C	T	C	C		T
ss135675008	ENSMUSSNP1668255	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320896719	CHEV_3_116607836	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51369777					SNP	C	C	T	C	T	T	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435747	NES15935081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1205 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			418 bp distal
Rr583801	regulatory region 583801			777 bp distal
Rr583802	regulatory region 583802			536 bp distal
Rr583803	regulatory region 583803			1050 bp proximal
Tssr31391	transcription start site region 31391			1312 bp downstream
Tssr31392	transcription start site region 31392			1230 bp downstream
Tssr31393	transcription start site region 31393			1203 bp downstream
Tssr31394	transcription start site region 31394			1166 bp downstream
Tssr31395	transcription start site region 31395			520 bp downstream
Tssr31396	transcription start site region 31396			1455 bp upstream