rs51372677 SNP Detail

Summary

• ID
  rs51372677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCGCAGA AATCCCCGCC
  ATTCACAACC AACCTGGGAT GGGTTTATGA TGCCAGCTAC ATGGAAGGCT GAGGCAGGAG
  GATTCTAAAT TTAAGGCCAG CTGGGGCAAC TGACTGAGAC CCTATCTCAC AATAAAAAGT
  AAACGGAGAC CTGAGAATTC AGCCTCGTGG TAGGGAGTCT GCCTAGCATG CCTTTGAAGC
  M
  CTAAATTCAA TCTCTAGCAT CGAAGAAAAG TCATTAACGT TCCTTTGCCT CCTCTGACTC
  TGCCACAGGG TTCAGGCCAA GCATCCTAGA AGCACAGTAC AGAAAGTAGG CATTCACCCT
  GAGCATGATG AGACACACCT AGAGTCAGCC TACCTTGAAG CTTTCAGAAA TATGACCCTC
  AGGCACCCCA GGTCCTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716429	ENSMUSSNP4850962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss323830218	CHEV_11_99854007	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51372677					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	848 bp proximal
Krtap17-1	keratin associated protein 17-1	541 bp downstream
Tssr110721	transcription start site region 110721	1299 bp downstream