rs51372788 SNP Detail

Summary

• ID
  rs51372788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82904400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGTCT TTTCTGGGAC
  TCTTTAACCT GATTCAAGTA TCTATGTTAC TGTTTTGAAA TTCTTTATTG CCTATTAGAA
  TTTTTTAATG ATAAACTTTA CCATTTTCAG TCTCCCTCAT AGCCTTTAAG TGGCTACATC
  TACGTCTACA GGTTATAGGT TATCAGTGAG TGTATCTCAC CCCTGCATTA AGTTATGAGA
  M
  TCTAGGTGAA ACTGTTCTTA AGCATCCAGA CAATAGGCAG TACAGGTCAC TGATCCTGAG
  CGGCAGTCTT ACTGCCTAGA AGGAAAGATG GGAGGAAATC AAAACAGTGC CTGGATAAAC
  TTCCTCGATA GAAGAGACAG AGCTTGAGGT CCAGAGAGAT GAAGGAAGTT AGACTCTGGA
  GACAGGAGTG AAGAGATGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61434209	NES16819563	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51372788					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61434209	NES16819563	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82904400 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	within coordinates
Rr401561	regulatory region 401561	1275 bp upstream
Rr683838	regulatory region 683838	1475 bp proximal
Rr683839	regulatory region 683839	1634 bp proximal
Tssr90739	transcription start site region 90739	1640 bp downstream