rs51372827 SNP Detail

Summary

• ID
  rs51372827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56903377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCCTCG TTCTTGGAAG
  CCTCATCAAA ATTCTCCACC AGATCTGGAA CTTCCTCCTC CTCCTCCTCT TCCTCCTCCA
  GGAGCAAGTG GTGCTTTTCC ATCCACAGAT TGTTTGGGCA GAACTTCAGC CGGTCTCCTT
  AAACTAGTCA GACCGTCTGC ACCCAGCTGG TTTAGGATGC TGGCAAGCAT TTCTGTCAGC
  Y
  GCTCTGTCTC AGCGTGGCCT GTAATGGTAA AAGTGCCAGA AATGCCTCAA CTTTAGGGTT
  GTTAAAATGA TTCACTGTTC CATGGTTTGT AAACATGTTC ACCTCTTCAT ACCAGAGATA
  TTGTTTACCC CTAACTTCTT TAAGGAGAAC TGCAGGGTTT TTTTTTTTTA TCATCTGCCA
  TGCTGTTCTG TGAAATATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52725530	NES15565051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51372827					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52725530	NES15565051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56903377 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps18	basic transcription factor 3, pseudogene 18	within coordinates
Cpgi6529	CpG island 6529	1928 bp proximal
Gm62612	predicted gene, 62612	within coordinates
Rr492707	regulatory region 492707	1435 bp proximal