About   Help   FAQ
rs51372996 SNP Detail
Summary
  • ID
    rs51372996
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr16:93788835 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGGTGGGTG ACAGTGAGGT
    GAAGGACACT GTTGCTTTTG TGGTCAATTC TGAGCAATGG CATCTCCCTG GCCTTGTGTA
    TTCCCAGGGA TGGTTTCTCT GAATGACTAC CATGTCCATT GTCCTGTAGG GAAACAGAAT
    CTCCAAGGAG ACAGGACCAG GGTGGGTAAT TGGAGCAGAG AGGGAGCTCT GGGAGAAGAG
    R
    CCATTCTCCA GGACAGGAAG TTGGGTAAGC CTGCTTCATG TCCCACTCCA AAGCCTTCTG
    AGTCAGTAGG AAGGACCTCT AGTCAAGAAG TTGTCAAAAA GAAAGAGGTG GCCCCACGGA
    AAGAGCGAGA CCAGGACTGA ACACTCACAC AGAATTCTGT TTCCGGCCTG TCCTTCAGCC
    ACATTCTAGG CTAGACCTCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss60510104 NES16529655 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs51372996 SNP G G G G G G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60510104 NES16529655 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:93788835 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cldn14 claudin 14 within coordinates
Rr324727 regulatory region 324727 1588 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory