rs51373397 SNP Detail

Summary

• ID
  rs51373397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127274027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTGGG TGAATCAAGA
  TGGCCTCTTT ATGTTTCTTT CTACAGTCCT CTTGCCCTGA TTCCTTCCTA ATCGTTTCTC
  TCCTGTGTAC AGTACCTTAG TCTCAATGGG AGGAGCTTTG AAAGGACCCC CTCCTTGAGC
  CCCTATTTGT TGTCTGGTTT TTGTTGTCTC CTGGCATACT TTCTCATAGC AATAGCCATA
  W
  AGGACATGTT TCTGCTTCAG GTAACCACAT TCAGGGCAAA TGTTGGGAGC TATTAAGACA
  ACTCTTGATC TTTAAATTGG ACCTCTCTCC ACGAGAAGAA AAGAGGGTCA AAAGCGGGCC
  ACCGACACAT GGATTCTGAG AACCACAGGA TGTTCCAGCC CTAAATCATC TCAGATGTCC
  TGACCACACC CTGATACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61079338	NES16587424	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs51373397					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079338	NES16587424	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127274027 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	Intron
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	742 bp upstream