rs51373565 SNP Detail

Summary

• ID
  rs51373565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80556372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGCGGCT GCGGGACTTC CTCTCCAGCC AGGAGCGCCA
  GGCCCTCTGC GCCGCCTGGA GCCCCTACGA GGAGGCAGTC TCCAGCACCC GTGCCAAGGC
  Y
  AAGGCCAAGG CCAAGGTCCC GGCCCAGCCC ACTGAGTCCC TGGCCTACTG GCCAGACCGC
  TCGGACACCG AAGTGCCCCC ACTGGACCTG GGGTGGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148221197	ENSMUSSNP3765135	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51373565					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80556372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7376	CpG island 7376	within coordinates
Fam83f	family with sequence similarity 83, member F	within coordinates
Tssr132233	transcription start site region 132233	538 bp downstream
Tssr132234	transcription start site region 132234	525 bp downstream
Tssr132235	transcription start site region 132235	494 bp downstream
Tssr132236	transcription start site region 132236	475 bp downstream
Tssr132237	transcription start site region 132237	310 bp downstream