rs51374080 SNP Detail

Summary

• ID
  rs51374080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101312129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA ATTCATAGAT TCACTATTAT
  R
  TAACAAACAA GATGGCTCAA CTATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145557386	ENSMUSSNP6916913	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322351564	CHEV_7_108811436	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51374080					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101312129 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	829 bp upstream
Cpgi19507	CpG island 19507	638 bp proximal
Rr400489	regulatory region 400489	575 bp upstream
Rr652442	regulatory region 652442	701 bp distal
Rr652443	regulatory region 652443	221 bp proximal
Rr652444	regulatory region 652444	1036 bp proximal
Rr652445	regulatory region 652445	1090 bp proximal
Tssr68257	transcription start site region 68257	681 bp upstream
Tssr68258	transcription start site region 68258	692 bp upstream
Tssr68259	transcription start site region 68259	713 bp upstream
Tssr68260	transcription start site region 68260	805 bp upstream
Tssr68261	transcription start site region 68261	819 bp upstream