rs51374322 SNP Detail

Summary

• ID
  rs51374322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130089905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGCTTT CAGTCTAATA
  GTTGGCTGCG AACATCCACC TCTATGTTTG TAAGACTCTG GCAGGGCCTC TCAGGAGACA
  GCCATATCAG GTGCCTTTCA GCATGCACTT CTTGGCATCC ACAATAGTGT CTGAGTTTGG
  TAACTGTATA TGGGATGAAT CCCCAGGTGG GACAGTCTCT GGGTGGCCTT CAGACTGAAG
  R
  AATTCAGTCT CTGCTCAACA CTTTATCTCC TTATTTGCTC CTGTTAGTAT TTTGTTCTAA
  GAATGACCAA AGCACCCACA CTTTGGTCTT CCTTCTTATT TGACTTCATG TGGTCTGTGA
  ATTGTATCCT GGTCATTTGG AGCTTTGGGG CTAATATCCA CTTATCAGTG AGTGCATACC
  ATGTGTATTC TTTTGTAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145473130	ENSMUSSNP3089657	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319971086	CHEV_1_132058745	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51374322					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130089905 () rs orientation: forward

Symbol	Name	Function Class
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8552	transcription start site region 8552	1659 bp upstream
Tssr8553	transcription start site region 8553	1688 bp upstream