rs51375199 SNP Detail

Summary

• ID
  rs51375199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56426662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTAAAA CATAAGGCAG
  AGGGTGGGCC AGATGGCTCT GCGGGTGAAG GAGTTTGCTG CCAAGCCCAA GAACCCGAGT
  TTGAATCCCT AGCTGCCACA CGGTGAACAG CTGGAACACA CTCCTGCAAG GAGCCCTCTG
  ACCTCCACAG GCTCACTGTG GTGCATGCGC ACAAAACAAA TGTACAACAA AAGGGAACTG
  Y
  ACAAACACCG AGCTGTTCAG TCAGCCTAGG AGCCGTTTTA TTAACTGCTT TGGTGACCCC
  TGAAACAGAC GTGTCAAAGC CAGATAAACA CAAGGTGGCC TGGGGGCCGG CACAGGAAGA
  GTGAGAGGTG GAAGAGTTGT GGCGAGTGGA GAGGACCCAG AGAGGGAGTC CGAGAATAGC
  ATTCCTGGCT GAGGGAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62800469	NES17363672	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51375199					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62800469	NES17363672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56426662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9339	CpG island 9339	1935 bp distal
Cpgi9340	CpG island 9340	134 bp proximal
Gm56918	predicted gene, 56918	112 bp upstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	16 bp downstream
Rr332132	regulatory region 332132	662 bp distal
Rr340021	regulatory region 340021	1861 bp distal
Rr340022	regulatory region 340022	within coordinates
Tssr5174	transcription start site region 5174	532 bp upstream
Tssr148750	transcription start site region 148750	454 bp downstream
Tssr148751	transcription start site region 148751	631 bp downstream
Tssr148752	transcription start site region 148752	686 bp downstream
Tssr148753	transcription start site region 148753	951 bp downstream
Tssr148754	transcription start site region 148754	1009 bp downstream
Tssr148755	transcription start site region 148755	1131 bp downstream
Tssr148756	transcription start site region 148756	1170 bp downstream
Tssr148757	transcription start site region 148757	1348 bp downstream
Tssr148758	transcription start site region 148758	1368 bp downstream