rs51376538 SNP Detail

Summary

• ID
  rs51376538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71245912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCTGTAC CCACTGTGCA TATACATTGT TGTTCCAACT
  GATCACCTCA GAGGCCTGGG GAGGGTGATT AATTGTGTTT CCTCAGTTAT ATATGTCACA
  R
  TTTAGGGAAT ATGTATGGAT AGGTATAAAA GTCCAAAAGT AAAGGGGAAA TGTTACCAGT
  ACAGTTTGCA ATAAGTTTTT GCTGTGCCTG GCCGAATAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133274930	ENSMUSSNP2814352	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321817305	CHEV_6_71218922	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51376538					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71245912 () rs orientation: forward

Symbol	Name	Function Class
Rr379579	regulatory region 379579	within coordinates
Rr379580	regulatory region 379580	1793 bp upstream
Tssr56988	transcription start site region 56988	1946 bp upstream
Tssr61348	transcription start site region 61348	1786 bp downstream
Tssr61349	transcription start site region 61349	1803 bp downstream