rs51377343 SNP Detail

Summary

• ID
  rs51377343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG GAGCCCGTGG TGAGTGGCAA
  Y
  TTCGTTCTGT AGGAAAGATG TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148223063	ENSMUSSNP3058687	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320605466	CHEV_2_164158603	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51377343					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174787 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	462 bp upstream
Tssr745	transcription start site region 745	505 bp upstream
Tssr746	transcription start site region 746	516 bp upstream
Tssr747	transcription start site region 747	529 bp downstream
Tssr748	transcription start site region 748	550 bp upstream
Tssr749	transcription start site region 749	582 bp upstream
Tssr750	transcription start site region 750	595 bp upstream
Tssr751	transcription start site region 751	649 bp upstream
Tssr752	transcription start site region 752	718 bp upstream
Tssr753	transcription start site region 753	725 bp upstream
Tssr754	transcription start site region 754	1397 bp upstream
Tssr21562	transcription start site region 21562	131 bp downstream
Tssr21563	transcription start site region 21563	122 bp downstream
Tssr21564	transcription start site region 21564	91 bp downstream
Tssr21565	transcription start site region 21565	78 bp downstream
Tssr21566	transcription start site region 21566	67 bp downstream
Tssr21567	transcription start site region 21567	55 bp downstream
Tssr21568	transcription start site region 21568	46 bp downstream
Tssr21569	transcription start site region 21569	428 bp upstream
Tssr21570	transcription start site region 21570	490 bp upstream
Tssr21571	transcription start site region 21571	521 bp upstream
Tssr21572	transcription start site region 21572	538 bp upstream
Tssr21573	transcription start site region 21573	567 bp upstream
Tssr21574	transcription start site region 21574	631 bp upstream
Tssr21575	transcription start site region 21575	1409 bp upstream
Tssr21576	transcription start site region 21576	1425 bp upstream
Tssr21577	transcription start site region 21577	1444 bp upstream
Tssr27433	transcription start site region 27433	486 bp downstream
Tssr27434	transcription start site region 27434	509 bp downstream
Tssr27435	transcription start site region 27435	537 bp downstream
Tssr27436	transcription start site region 27436	556 bp downstream
Tssr27437	transcription start site region 27437	577 bp downstream
Tssr27438	transcription start site region 27438	607 bp downstream
Tssr27439	transcription start site region 27439	621 bp downstream
Tssr27440	transcription start site region 27440	631 bp downstream
Tssr27441	transcription start site region 27441	686 bp downstream
Tssr27442	transcription start site region 27442	694 bp downstream
Tssr27443	transcription start site region 27443	757 bp downstream
Tssr27444	transcription start site region 27444	766 bp downstream
Tssr27445	transcription start site region 27445	1382 bp downstream
Tssr27446	transcription start site region 27446	1426 bp downstream
Tssr27447	transcription start site region 27447	1521 bp downstream