rs51378308 SNP Detail

Summary

• ID
  rs51378308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACCAAA GAGCATACTT
  TGAACAGAAG CAACATAAAA ACAAAGCAAG CTTTCCATGC CTTCCATCCT GAAGGATCAG
  GGCCAGCGGA GATGGTCAGC GGATATAAAT CGGTGTGAGA GTGTGAGGTC CAGCTGTGCT
  GTAGCAGAAG CTTGGGAGCC TCACCGGTGA ATGCCTGTAT CCTGCGGGAA AGCATCCTTC
  Y
  CCATGTGGGA GAGGTGGAGT GCAAAGGCCT ACAGTGGCTA AGCCATTGAT GATGGGCACT
  CTATCAAACT TGGCTCCCTT CCTCTTTGTC TTTCCTCCCC AACCCGTGGT GGGGTGAGGG
  TGGGTGAATG CGACCATCAG ACTAGCACCT GGGTGCCTAC TTCTTTTGTT CGATTTGATA
  AATAAACCCC TTCCCCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042987	ENSMUSSNP7088243	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321009823	CHEV_3_145972743	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51378308					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015534 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1149 bp proximal